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08.02.2014, 18:47

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The distances were processed by the neighbornet algorithm (Bryant as well as Moulton, 2004) To obtain an amount of unrooted phylogenetic networks.In a second studying, We used one accidental subsample of the Sargasso Sea data (Venter et 's, 2004) And one subsample from the Sorcerer II Global Ocean Sampling expedition data (GOS) (Rusch et ing, 2007) And the results and setup from the PMLBergen study, to visualise the comparison of multiple marine metagenomes from different environments processed using different sampling and sequencing strategies. All 10 data sets were randomly resampled to the actual data set size to allow intercomparison of taxonomic abundances (as an example, Gilbert et 's, 2009). As in their first study, We performed a multiple comparing of the 10 data sets using four of the distances (Goodall's list, Euclidean way,chanel espadrilles leather, Hellinger array and way) At each of seven taxonomic ranks to create 28 several other networks (supplementary Figures S2.1, S2.2), Networks obtained using the Kulczynski and Bray distances looked a bit like the networks obtained using Euclidean distance in the previous study (additional Figure S1),valentino shoes sale, So we dropped the Kulczynski and Bray distances from subsequent findings.past experiences, Multiple comparisons were performed using four of the indices bearing in mind only bacterial taxa at six taxonomic ranks, resulting in a further 24 networks (second Figure S3.1).

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